Signal Manager :: View

::General Information

ID U0014

Creation Date 16 September 1999

Updating Date 16 September 1999

Standard Name Vimentin 3'UTR cis-acting element (VIM3)

UTRSite Pattern

p1=yttrrrrraa[2,0,0] 0...4 
p2=cagctttcaagtgccttt[2,0,0] 0...2
p3=tscagtt[2,0,0] 6...7 
p4=gagcg[2,0,0] 0...1 p5=aagatw[2,0,0]
p1/p2/p3/p4/p5:(p6=yttrrrrraacagctttcaagtgccttttscagttgagcgaagatw[2,0,0])

Random Expectation 0.0 hits/kb

::Taxonomy

UTR Region 3'

Taxon Range Vertebrata

::Description

Description Vimentin is an intermediate filement protein whose 3'UTR sequence is highly conserved among vertebrates and has been found to be a target for one or more RNA binding protein which include a 46-and 35-kDa protein plus a minor band containing a 60-kDa protein. The sequences required for binding are contained within a region 61-114 nucleotides downstream the stop codon which is able to fold into a Y-shaped secondary structure confirmed by nuclease and lead cleavage. It has been......

::Features

Feature Key VIM3

::Transcript(s) / Gene(s)

UTR(s)

Description	Species	Link	Ref.
3' UTR in Homo sapiens vimentin (VIM), mRNA.	Homo sapiens	UTRef: 3HSAR031179	[U1]

Transcript(s)

Description	Species	Link	Ref.
Homo sapiens vimentin (VIM), mRNA.	Homo sapiens	RefSeq: NM_003380	[T1]

Gene(s)

Description	Species	Link	Ref.
vimentin (VIM).	Homo sapiens	EntrezGene: 7431	[G1]

::References

ID [1]

Authors Zehner ZE, Sheperd RK, Gabryszuk J, Fu T-F, Al-Ali M and Holmes WM.

Title RNA-protein protein interactions within the 3'untranslated region of vimentin mRNA

Citation Nucleic Acids Res. 25: 3362-3370, 1997

Year 1997

ID [U1]

Authors Zehner ZE, Sheperd RK, Gabryszuk J, Fu T-F, Al-Ali M and Holmes WM.

Title RNA-protein protein interactions within the 3'untranslated region of vimentin mRNA

Citation Nucleic Acids Res. 25: 3362-3370, 1997

Year 1997

ID [T1]

Authors Zehner ZE, Sheperd RK, Gabryszuk J, Fu T-F, Al-Ali M and Holmes WM.

Title RNA-protein protein interactions within the 3'untranslated region of vimentin mRNA

Citation Nucleic Acids Res. 25: 3362-3370, 1997

Year 1997

ID [G1]

Authors Zehner ZE, Sheperd RK, Gabryszuk J, Fu T-F, Al-Ali M and Holmes WM.

Title RNA-protein protein interactions within the 3'untranslated region of vimentin mRNA

Citation Nucleic Acids Res. 25: 3362-3370, 1997

Year 1997