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::General Information
ID U0014
Creation Date 16 September 1999
Updating Date 16 September 1999
Standard Name Vimentin 3'UTR cis-acting element (VIM3)
UTRSite Pattern
p1=yttrrrrraa[2,0,0] 0...4 
p2=cagctttcaagtgccttt[2,0,0] 0...2
p3=tscagtt[2,0,0] 6...7 
p4=gagcg[2,0,0] 0...1 p5=aagatw[2,0,0]
p1/p2/p3/p4/p5:(p6=yttrrrrraacagctttcaagtgccttttscagttgagcgaagatw[2,0,0])
Random Expectation 0.0 hits/kb
::Taxonomy
UTR Region 3'
Taxon Range Vertebrata
::Description
Description Vimentin is an intermediate filement protein whose 3'UTR sequence is highly conserved among vertebrates and has been found to be a target for one or more RNA binding protein which include a 46-and 35-kDa protein plus a minor band containing a 60-kDa protein. The sequences required for binding are contained within a region 61-114 nucleotides downstream the stop codon which is able to fold into a Y-shaped secondary structure confirmed by nuclease and lead cleavage. It has been......
::Features
Feature Key VIM3
::Transcript(s) / Gene(s)
UTR(s)
Description Species Link Ref.
3' UTR in Homo sapiens vimentin (VIM), mRNA. Homo sapiens UTRef: 3HSAR031179 [U1]
Transcript(s)
Description Species Link Ref.
Homo sapiens vimentin (VIM), mRNA. Homo sapiens RefSeq: NM_003380 [T1]
Gene(s)
Description Species Link Ref.
vimentin (VIM). Homo sapiens EntrezGene: 7431 [G1]
::References
ID [1]
Authors Zehner ZE, Sheperd RK, Gabryszuk J, Fu T-F, Al-Ali M and Holmes WM.
Title RNA-protein protein interactions within the 3'untranslated region of vimentin mRNA
Citation Nucleic Acids Res. 25: 3362-3370, 1997
Year 1997
ID [U1]
Authors Zehner ZE, Sheperd RK, Gabryszuk J, Fu T-F, Al-Ali M and Holmes WM.
Title RNA-protein protein interactions within the 3'untranslated region of vimentin mRNA
Citation Nucleic Acids Res. 25: 3362-3370, 1997
Year 1997
ID [T1]
Authors Zehner ZE, Sheperd RK, Gabryszuk J, Fu T-F, Al-Ali M and Holmes WM.
Title RNA-protein protein interactions within the 3'untranslated region of vimentin mRNA
Citation Nucleic Acids Res. 25: 3362-3370, 1997
Year 1997
ID [G1]
Authors Zehner ZE, Sheperd RK, Gabryszuk J, Fu T-F, Al-Ali M and Holmes WM.
Title RNA-protein protein interactions within the 3'untranslated region of vimentin mRNA
Citation Nucleic Acids Res. 25: 3362-3370, 1997
Year 1997